Hanlee P. Ji: search on Z-Library

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1

[IEEE ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) - Barcelona, Spain (2020.5.4-2020.5.8)] ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) - Overcoming High Nanopore Basecaller Error Rates for DNA Storage via Basecaller-Decoder Integration and Convolutional Codes

Chandak, Shubham, Neu, Joachim, Tatwawadi, Kedar, Mardia, Jay, Lau, Billy, Kubit, Matthew, Hulett, Reyna, Griffin, Peter, Wootters, Mary, Weissman, Tsachy, Ji, Hanlee

Year:

2020

File:

PDF, 3.19 MB

2020

2

Efficient targeted resequencing of human germline and cancer genomes by oligonucleotide-selective sequencing

Myllykangas, Samuel, Buenrostro, Jason D, Natsoulis, Georges, Bell, John M, Ji, Hanlee P

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 595 KB

english, 2011

3

Next-generation DNA sequencing

Shendure, Jay, Ji, Hanlee

Journal:

Nature Biotechnology

Year:

2008

Language:

english

File:

PDF, 694 KB

english, 2008

4

Performance comparison of whole-genome sequencing platforms

Lam, Hugo Y K, Clark, Michael J, Chen, Rui, Chen, Rong, Natsoulis, Georges, O'Huallachain, Maeve, Dewey, Frederick E, Habegger, Lukas, Ashley, Euan A, Gerstein, Mark B, Butte, Atul J, Ji, Hanlee P, Sn

Journal:

Nature Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.02 MB

english, 2011

5

Improving bioinformatic pipelines for exome variant calling

Journal:

Genome Medicine

Year:

2012

Language:

english

File:

PDF, 89 KB

english, 2012

6

Ultra-fast detection and quantification of nucleic acids by amplification-free fluorescence assay

Uhd, Jesper, Miotke, Laura, Ji, Hanlee P., Dunaeva, Marina, Pruijn, Ger J. M., JÃ¸rgensen, Christian Damsgaard, Kristoffersen, Emil Laust, Birkedal, Victoria, Yde, Christina Westmose, Nielsen, Finn Ci

Journal:

The Analyst (Royal Society of Chemistry)

Year:

2020

File:

PDF, 1.57 MB

2020

7

Performance comparison of whole-genome sequencing platforms

Lam, Hugo Y K, Clark, Michael J, Chen, Rui, Chen, Rong, Natsoulis, Georges, O'Huallachain, Maeve, Dewey, Frederick E, Habegger, Lukas, Ashley, Euan A, Gerstein, Mark B, Butte, Atul J, Ji, Hanlee P, Sn

Journal:

Nature Biotechnology

Year:

2012

Language:

english

File:

PDF, 65 KB

english, 2012

8

High Sensitivity Detection and Quantitation of DNA Copy Number and Single Nucleotide Variants with Single Color Droplet Digital PCR

Miotke, Laura, Lau, Billy T., Rumma, Rowza T., Ji, Hanlee P.

Journal:

Analytical Chemistry

Year:

2014

Language:

english

File:

PDF, 2.45 MB

english, 2014

9

3. Integrated whole-genome sequencing and bioinformatics analysis for copy number profiling identifies a recurrent alteration associated with poor survival in Stage III colorectal cancer

Xia, Li Charlie, Lee, Hojoon, Grimes, Sue, Kubit, Matt, Van Hummelen, Paul, Nadauld, Lincoln, Ji, Hanlee

Journal:

Cancer Genetics

Year:

2019

Language:

english

File:

PDF, 45 KB

english, 2019

10

Targeted sequencing library preparation by genomic DNA circularization

Samuel Myllykangas, Georges Natsoulis, John M Bell, Hanlee P Ji

Journal:

BMC Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

11

Direct autoradiography after radio-ligand binding to identify mammalian cell clones expressing hormone receptor cDNA

Ji, Inhae, Ji, Hanlee, Ji, Tae H.

Journal:

Nucleic Acids Research

Year:

1993

Language:

english

File:

PDF, 2.08 MB

english, 1993

12

Detecting mutations in mixed sample sequencing data using empirical Bayes

Muralidharan, Omkar, Natsoulis, Georges, Bell, John, Ji, Hanlee, Zhang, Nancy R.

Journal:

The Annals of Applied Statistics

Year:

2012

Language:

english

File:

PDF, 382 KB

english, 2012

13

Chromosome-scale mega-haplotypes enable digital karyotyping of cancer aneuploidy

Bell, John M., Lau, Billy T., Greer, Stephanie U., Wood-Bouwens, Christina, Xia, Li C., Connolly, Ian D., Gephart, Melanie H., Ji, Hanlee P.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 1.61 MB

english, 2017

14

Targeted deep resequencing of the human cancer genome using next-generation technologies

Myllykangas, Samuel, Ji, Hanlee P.

Journal:

Biotechnology and Genetic Engineering Reviews

Year:

2010

Language:

english

File:

PDF, 483 KB

english, 2010

15

Spondyloepimetaphyseal dysplasia with joint laxity (SEMDJL): Presentation in two unrelated patients in the United States

Smith, Wendy, Ji, Hanlee P., Mouradian, Wendy, Pagon, Roberta A.

Journal:

American Journal of Medical Genetics

Year:

1999

Language:

english

File:

PDF, 620 KB

english, 1999

16

DETECTING MUTATIONS IN MIXED SAMPLE SEQUENCING DATA USING EMPIRICAL BAYES

Omkar Muralidharan, Georges Natsoulis, John Bell, Hanlee Ji and Nancy R. Zhang

Journal:

The Annals of Applied Statistics

Year:

2012

Language:

english

File:

PDF, 2.10 MB

english, 2012

17

Identification of large rearrangements in cancer genomes with barcode linked reads

Xia, Li C., Bell, John M., Wood-Bouwens, Christina, Chen, Jiamin J., Zhang, Nancy R., Ji, Hanlee P.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 3.14 MB

english, 2017

18

Under-expression of Kalirin-7 Increases iNOS Activity in Cultured Cells and Correlates to Elevated iNOS Activity in Alzheimer's Disease Hippocampus1

Youn, HyeSook, Ji, Inhae, Ji, Hanlee P., Markesbery, William R., Ji, Tae H.

Journal:

Journal of Alzheimer's Disease

Year:

2007

Language:

english

File:

PDF, 293 KB

english, 2007

19

Reproducibility Probability Score—incorporating measurement variability across laboratories for gene selection

Lin, Guixian, He, Xuming, Ji, Hanlee, Shi, Leming, Davis, Ronald W, Zhong, Sheng

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 170 KB

english, 2006

20

Single molecule counting and assessment of random molecular tagging errors with transposable giga-scale error-correcting barcodes

Lau, Billy T., Ji, Hanlee P.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

21

Tandem Oligonucleotide Probe Annealing and Elongation To Discriminate Viral Sequence

Taskova, Maria, Uhd, Jesper, Miotke, Laura, Kubit, Matthew, Bell, John, Ji, Hanlee P., Astakhova, Kira

Journal:

Analytical Chemistry

Year:

2017

Language:

english

File:

PDF, 474 KB

english, 2017

22

Sa1337 DIFFERENTIAL EXPRESSION OF CIRCULATING MICRORNAS IN GASTRIC INTESTINAL METAPLASIA

Huang, Robert J., Ji, Hanlee, Hwang, Joo Ha

Journal:

Gastroenterology

Year:

2020

File:

PDF, 231 KB

2020

23

Data quality in genomics and microarrays

Ji, Hanlee, Davis, Ronald W

Journal:

Nature Biotechnology

Year:

2006

Language:

english

File:

PDF, 227 KB

english, 2006

24

Single-Color Digital PCR Provides High-Performance Detection of Cancer Mutations from Circulating DNA

Wood-Bouwens, Christina, Lau, Billy T., Handy, Christine M., Lee, HoJoon, Ji, Hanlee P.

Journal:

The Journal of Molecular Diagnostics

Year:

2017

Language:

english

File:

PDF, 1.60 MB

english, 2017

25

One Size Does Not Fit All: Marked Heterogeneity in Incidence of and Survival from Gastric Cancer among Asian American Subgroups

Huang, Robert J., Sharp, Nora, Talamoa, Ruth O., Ji, Hanlee P., Hwang, Joo Ha, Palaniappan, Latha P.

Journal:

Cancer Epidemiology Biomarkers & Prevention

Year:

2020

File:

PDF, 441 KB

2020

26

Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale

Zlitni, Soumaya, Bishara, Alex, Moss, Eli L., Tkachenko, Ekaterina, Kang, Joyce B., Culver, Rebecca N., Andermann, Tessa M., Weng, Ziming, Wood, Christina, Handy, Christine, Ji, Hanlee P., Batzoglou,

Journal:

Genome Medicine

Year:

2020

File:

PDF, 2.15 MB

2020

27

Identification of a biomarker panel using a multiplex proximity ligation assay improves accuracy of pancreatic cancer diagnosis

Stephanie T Chang, Jacob M Zahn, Joe Horecka, Pamela L Kunz, James M Ford, George A Fisher, Quynh T Le, Daniel T Chang, Hanlee Ji, Albert C Koong

Journal:

Journal of Translational Medicine

Year:

2009

Language:

english

File:

PDF, 1.16 MB

english, 2009

28

Genetic-based biomarkers and next-generation sequencing: the future of personalized care in colorectal cancer

Kim, Rebecca Y, Xu, Hua, Myllykangas, Samuel, Ji, Hanlee

Journal:

Personalized Medicine

Year:

2011

Language:

english

File:

PDF, 1.18 MB

english, 2011

29

Covalent ‘click chemistry’-based attachment of DNA onto solid phase enables iterative molecular analysis

Lau, Billy T., Ji, Hanlee P.

Journal:

Analytical Chemistry

Year:

2019

Language:

english

File:

PDF, 462 KB

english, 2019

30

[IEEE 2019 57th Annual Allerton Conference on Communication, Control, and Computing (Allerton) - Monticello, IL, USA (2019.9.24-2019.9.27)] 2019 57th Annual Allerton Conference on Communication, Control, and Computing (Allerton) - Improved read/write cost tradeoff in DNA-based data storage using LDPC codes

Chandak, Shubham, Ji, Hanlee, Tatwawadi, Kedar, Lau, Billy, Mardia, Jay, Kubit, Matthew, Neu, Joachim, Griffin, Peter, Wootters, Mary, Weissman, Tsachy

Year:

2019

File:

PDF, 6.09 MB

2019

31

COMP-01. MODELING THE EVOLUTION OF PLOIDY IN A RESOURCE RESTRICTED ENVIRONMENT

Andor, Noemi, Barnholtz-Sloan, Jill, Ji, Hanlee

Journal:

Year:

2019

File:

PDF, 80 KB

2019

32

Inherited Mutations in PTEN That Are Associated with Breast Cancer, Cowden Disease, and Juvenile Polyposis

Eric D. Lynch, Elizabeth A. Ostermeyer, Ming K. Lee, J. Fernando Arena, HanLee Ji, Jamie Dann, Karen Swisshelm, David Suchard, Patrick M. MacLeod, Stener Kvinnsland, Bjorn Tore Gjertsen, Ketil Heimdal

Journal:

The American Journal of Human Genetics

Year:

1997

Language:

english

File:

PDF, 1018 KB

english, 1997

33

The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations

Lee, HoJoon, Palm, Jennifer, Grimes, Susan M., Ji, Hanlee P.

Journal:

Genome Medicine

Year:

2015

Language:

english

File:

PDF, 2.24 MB

english, 2015

34

Sa1345 THE GASTRIC PRECANCEROUS CONDITIONS STUDY (GAPS)

Huang, Robert J., Park, Sungho, Kwon, Nicole S., Chitre, Tanvi, Ji, Hanlee, Hwang, Joo Ha

Journal:

Gastroenterology

Year:

2020

File:

PDF, 401 KB

2020

35

MendeLIMS: a web-based laboratory information management system for clinical genome sequencing

Susan M Grimes,Hanlee P Ji

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

36

Correction to High Sensitivity Detection and Quantitation of DNA Copy Number and Single Nucleotide Variants with Single Color Droplet Digital PCR

Miotke, Laura, Lau, Billy T., Rumma, Rowza T., Ji, Hanlee P.

Journal:

Analytical Chemistry

Year:

2014

Language:

english

File:

PDF, 106 KB

english, 2014

37

Kalirin is Under-Expressed in Alzheimer's Disease Hippocampus

Youn, HyeSook, Jeoung, MyoungKun, Koo, YongBum, Ji, Hanlee, Markesbery, William R., Ji, Inhae, Ji, Tae H.

Journal:

Journal of Alzheimer's Disease

Year:

2007

Language:

english

File:

PDF, 213 KB

english, 2007

38

Molecular inversion probes reveal patterns of 9p21 deletion and copy number aberrations in childhood leukemia

Joshua D. Schiffman, Yuker Wang, Lisa A. McPherson, Katrina Welch, Nancy Zhang, Ronald Davis, Norman J. Lacayo, Gary V. Dahl, Malek Faham, James M. Ford, Hanlee P. Ji

Journal:

Cancer Genetics and Cytogenetics

Year:

2009

Language:

english

File:

PDF, 423 KB

english, 2009

39

Pan-cancer analysis of the extent and consequences of intratumor heterogeneity

Andor, Noemi, Graham, Trevor A, Jansen, Marnix, Xia, Li C, Aktipis, C Athena, Petritsch, Claudia, Ji, Hanlee P, Maley, Carlo C

Journal:

Nature Medicine

Year:

2015

Language:

english

File:

PDF, 2.86 MB

english, 2015

40

Molecular Classification of the Inherited Hamartoma Polyposis Syndromes: Clearing the Muddied Waters

Charis Eng, HanLee Ji

Journal:

The American Journal of Human Genetics

Year:

1998

Language:

english

File:

PDF, 51 KB

english, 1998

41

Enzyme-Free Detection of Mutations in Cancer DNA Using Synthetic Oligonucleotide Probes and Fluorescence Microscopy

Miotke, Laura, Maity, Arindam, Ji, Hanlee, Brewer, Jonathan, Astakhova, Kira, Abraham, Thomas

Journal:

Year:

2015

Language:

english

File:

PDF, 1.54 MB

english, 2015

42

Targeted short read sequencing and assembly of re-arrangements and candidate gene loci provide megabase diplotypes

Shin, GiWon, Greer, Stephanie U, Xia, Li C, Lee, HoJoon, Zhou, Jun, Boles, T Christian, Ji, Hanlee P

Journal:

Nucleic Acids Research

Year:

2019

Language:

english

File:

PDF, 2.60 MB

english, 2019

43

CRISPRpic: fast and precise analysis for CRISPR-induced mutations via prefixed index counting

Lee, HoJoon, Chang, Howard Y, Cho, SeungÂ Woo, Ji, Hanlee P

Journal:

NAR Genomics and Bioinformatics

Year:

2020

Language:

english

File:

PDF, 1.65 MB

english, 2020

44

Precision Oncology Strategy in Trastuzumab-Resistant Human Epidermal Growth Factor Receptor 2âPositive Colon Cancer: Case Report of Durable Response to Ado-Trastuzumab Emtansine

Haslem, Derrick S., Ji, Hanlee P., Ford, James M., Nadauld, Lincoln D.

Journal:

JCO Precision Oncology

Year:

2017

File:

PDF, 809 KB

2017

45

Correction to High Sensitivity Detection and Quantitation of DNA Copy Number and Single Nucleotide Variants with Single Color Droplet Digital PCR

Miotke, Laura, Lau, Billy T., Rumma, Rowza T., Ji, Hanlee P.

Journal:

Analytical Chemistry

Year:

2015

File:

PDF, 159 KB

2015

46

Single cell genomic characterization reveals the cellular reprogramming of the gastric tumor microenvironment

Sathe, Anuja, Grimes, Susan M, Lau, Billy T, Chen, Jiamin, Suarez, Carlos, Huang, Robert Jeffrey, Poultsides, George A, Ji, Hanlee P.

Journal:

Clinical Cancer Research

Year:

2020

File:

PDF, 11.85 MB

2020

47

The structure of human acidic fibroblast growth factor and its interaction with heparin

Robert A. Copeland, Hanlee Ji, Anne J. Halfpenny, Robert W. Williams, Karen C. Thompson, Wayne K. Herber, Kenneth A. Thomas, Mark W. Bruner, James A. Ryan, Dorothy Marquis-Omer, Gautam Sanyal, Robert

Journal:

Archives of Biochemistry and Biophysics

Year:

1991

Language:

english

File:

PDF, 1.05 MB

english, 1991

48

Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis

Lee, HoJoon, Flaherty, Patrick, Ji, Hanlee P

Journal:

BMC Medical Genomics

Year:

2013

Language:

english

File:

PDF, 538 KB

english, 2013

49

A genome-wide approach for detecting novel insertion-deletion variants of mid-range size

Xia, Li C., Sakshuwong, Sukolsak, Hopmans, Erik S., Bell, John M., Grimes, Susan M., Siegmund, David O., Ji, Hanlee P., Zhang, Nancy R.

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 2.23 MB

english, 2016

50

A functional CRISPR/Cas9 screen identifies kinases that modulate FGFR inhibitor response in gastric cancer

Chen, Jiamin, Bell, John, Lau, Billy T., Whittaker, Tyler, Stapleton, Darren, Ji, Hanlee P.

Journal:

Year:

2019

Language:

english

File:

PDF, 1012 KB

english, 2019

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